https://layerfmri.com/2021/01/18/seminar/2026-03-31T17:46:21+00:00monthlyhttps://layerfmri.com/2019/11/20/jobs/https://layerfmri.com/wp-content/uploads/2019/11/screenshot-2020-02-19-at-12.13.19-e1582111015350.pngTweet introhttps://twitter.com/dgonzales1990/status/1220109634641571841 2026-03-16T16:44:58+00:00monthlyhttps://layerfmri.com/2020/05/17/brainart/https://layerfmri.com/wp-content/uploads/2017/11/bark.jpegBarkhttps://layerfmri.com/wp-content/uploads/2017/11/sm_smaller.jpgSM_smallerhttps://layerfmri.com/wp-content/uploads/2017/11/ohbm_gif.gifOHBM_gifhttps://layerfmri.com/wp-content/uploads/2017/11/ezgif-3-288cf14c2f22_.gifezgif-3-288cf14c2f22_https://layerfmri.com/wp-content/uploads/2017/11/ezgif-6-ee5b65c8b37b.gifezgif-6-ee5b65c8b37bhttps://layerfmri.com/wp-content/uploads/2017/11/ezgif-3-76589f73c589.gifezgif-3-76589f73c589https://layerfmri.com/wp-content/uploads/2017/11/ezgif-3-2775b14fa100.gifezgif-3-2775b14fa100https://layerfmri.com/wp-content/uploads/2017/11/scale_less_brain-01-e1579268477507.pngScale_less_brain-01https://layerfmri.com/wp-content/uploads/2017/11/ezgif-3-bb4dd80168ee-1.gifezgif-3-bb4dd80168ee (1)https://layerfmri.com/wp-content/uploads/2017/11/ezgif-3-f161d2413088.gifezgif-3-f161d24130882025-12-19T13:42:52+00:00monthlyhttps://layerfmri.com/2021/08/13/analysis-challenge/https://layerfmri.com/wp-content/uploads/2021/08/20251013_095913.jpg20251013_095913https://layerfmri.com/wp-content/uploads/2021/08/20251013_100513.jpg20251013_100513https://layerfmri.com/wp-content/uploads/2021/08/20251013_100019.jpg20251013_100019https://layerfmri.com/wp-content/uploads/2021/08/20251013_133421.jpg20251013_133421https://layerfmri.com/wp-content/uploads/2021/08/20251014_110746.jpg20251014_110746https://layerfmri.com/wp-content/uploads/2021/08/20251014_174550.jpg20251014_174550https://layerfmri.com/wp-content/uploads/2021/08/20251014_172843.jpg20251014_172843https://layerfmri.com/wp-content/uploads/2021/08/img-20251016-wa0050.jpgIMG-20251016-WA0050https://layerfmri.com/wp-content/uploads/2021/08/img-20251016-wa0079.jpgIMG-20251016-WA0079https://layerfmri.com/wp-content/uploads/2021/08/img-20251016-wa0068.jpgIMG-20251016-WA00682025-12-15T18:34:41+00:00monthlyhttps://layerfmri.com/2025/12/03/layercourse2023/https://layerfmri.com/wp-content/uploads/2025/12/layerfmri_zoomall_v2.pnglayerFMRI_zoomAll_v22025-12-04T17:04:11+00:00monthlyhttps://layerfmri.com/2025/09/19/epimyths/https://layerfmri.com/wp-content/uploads/2025/09/slide1-3.pngSlide1https://layerfmri.com/wp-content/uploads/2025/09/slide1-2.pngSlide1https://layerfmri.com/wp-content/uploads/2025/09/screenshot-2025-10-31-at-09.57.20.pngScreenshot 2025-10-31 at 09.57.20https://layerfmri.com/wp-content/uploads/2025/09/screenshot-2025-10-31-at-09.45.52.pngScreenshot 2025-10-31 at 09.45.52https://layerfmri.com/wp-content/uploads/2025/09/slide1-1.pngSlide1https://layerfmri.com/wp-content/uploads/2025/09/screenshot-2025-10-03-at-09.55.52.pngScreenshot 2025-10-03 at 09.55.52https://layerfmri.com/wp-content/uploads/2025/09/screenshot-2025-10-03-at-09.43.44.pngScreenshot 2025-10-03 at 09.43.44https://layerfmri.com/wp-content/uploads/2025/09/screenshot-2025-10-03-at-09.37.07.pngScreenshot 2025-10-03 at 09.37.07https://layerfmri.com/wp-content/uploads/2025/09/slide1.pngSlide1https://layerfmri.com/wp-content/uploads/2025/09/blog_figure1-2.gifBlog_figure12025-11-21T17:01:58+00:00monthlyhttps://layerfmri.com/2018/02/02/gradient-temperature/https://layerfmri.com/wp-content/uploads/2018/02/screenshot-2018-02-04-17-54-291.pngscreenshot-2018-02-04-17-54-29https://layerfmri.com/wp-content/uploads/2018/02/3d_plot-01.png3D_plot-01https://layerfmri.com/wp-content/uploads/2018/02/screenshot-2018-02-04-17-57-12.pngScreenshot 2018-02-04 17.57.12https://layerfmri.com/wp-content/uploads/2018/02/screenshot-2018-02-04-17-55-02.pngScreenshot 2018-02-04 17.55.02https://layerfmri.com/wp-content/uploads/2018/02/screenshot-2018-02-04-17-54-29.pngScreenshot 2018-02-04 17.54.29https://layerfmri.com/wp-content/uploads/2018/02/screenshot-2018-02-04-17-53-55.pngScreenshot 2018-02-04 17.53.55https://layerfmri.com/wp-content/uploads/2018/02/screenshot-2018-01-30-13-59-53.pngScreenshot 2018-01-30 13.59.53https://layerfmri.com/wp-content/uploads/2018/02/gif_2_annotated.gifgif_2_annotatedparticipant 1, tSNR maps refer to a 30 min fMRI runhttps://layerfmri.com/wp-content/uploads/2018/02/gif_1_anotated.gifgif_1_anotatedhttps://layerfmri.com/wp-content/uploads/2018/02/3_gif_annotated.gif3_gif_annotated2025-11-13T01:34:57+00:00monthlyhttps://layerfmri.com/2021/07/12/the-best-sequence/https://layerfmri.com/wp-content/uploads/2021/07/night_comic-01-2.pngnight_comic-01https://layerfmri.com/wp-content/uploads/2021/07/trasportfleet-01-4.pngTrasportfleet-01https://layerfmri.com/wp-content/uploads/2021/07/book-01-1.pngBook-01https://layerfmri.com/wp-content/uploads/2021/07/control-01-2.pngControl-01https://layerfmri.com/wp-content/uploads/2021/07/donkey_method-01-2.pngdonkey_method-01https://layerfmri.com/wp-content/uploads/2021/07/consensus-01-4.pngConsensus-01https://layerfmri.com/wp-content/uploads/2021/07/figthing_kids-01-1.pngfigthing_kids-01https://layerfmri.com/wp-content/uploads/2021/07/screenshot-2021-07-10-at-14.11.39.pngScreenshot 2021-07-10 at 14.11.39https://layerfmri.com/wp-content/uploads/2021/07/bus_and_train-01-1.pngbus_and_train-01https://layerfmri.com/wp-content/uploads/2021/07/method_comment-01-1.pngmethod_comment-012025-09-02T12:46:36+00:00monthlyhttps://layerfmri.com/2018/07/30/quicklook/https://layerfmri.com/wp-content/uploads/2018/07/screenshot-2018-07-30-13-53-45.pngScreenshot 2018-07-30 13.53.452025-08-22T11:55:23+00:00monthlyhttps://layerfmri.com/2023/12/13/3rdordershim/https://layerfmri.com/wp-content/uploads/2023/12/20250721_130337.jpg20250721_130337https://layerfmri.com/wp-content/uploads/2024/03/screen-shot-2024-03-13-at-09.30.30.pngscreen-shot-2024-03-13-at-09.30.30https://layerfmri.com/wp-content/uploads/2024/03/s2_activation_2.gifs2_activation_2https://layerfmri.com/wp-content/uploads/2024/03/activation_4.gifactivation_4https://layerfmri.com/wp-content/uploads/2024/03/screen-shot-2024-03-12-at-12.25.46.pngscreen-shot-2024-03-12-at-12.25.46https://layerfmri.com/wp-content/uploads/2024/03/screen-shot-2024-03-12-at-12.25.37.pngscreen-shot-2024-03-12-at-12.25.37https://layerfmri.com/wp-content/uploads/2024/03/screen-shot-2024-03-12-at-12.15.35.pngscreen-shot-2024-03-12-at-12.15.35https://layerfmri.com/wp-content/uploads/2024/03/screen-shot-2024-03-12-at-12.15.27.pngscreen-shot-2024-03-12-at-12.15.27https://layerfmri.com/wp-content/uploads/2024/03/screen-shot-2024-03-12-at-12.14.32.pngscreen-shot-2024-03-12-at-12.14.32https://layerfmri.com/wp-content/uploads/2024/03/screen-shot-2024-03-12-at-12.08.23.pngscreen-shot-2024-03-12-at-12.08.232025-08-05T19:20:00+00:00monthlyhttps://layerfmri.com/about/2025-07-02T15:19:12+00:00weekly0.6https://layerfmri.com/2025/04/28/abstracts2025/2025-06-26T13:44:29+00:00monthlyhttps://layerfmri.com/2018/01/04/papers/https://layerfmri.com/wp-content/uploads/2018/01/covid_statistics-01.pngCOVID_statistics-01https://layerfmri.com/wp-content/uploads/2018/01/overview_book-01.pngOverview_book-01https://layerfmri.com/wp-content/uploads/2018/01/overview-01.pngOverview-01https://layerfmri.com/wp-content/uploads/2018/01/screenshot-2021-06-25-at-11.20.28.pngScreenshot 2021-06-25 at 11.20.28https://layerfmri.com/wp-content/uploads/2018/01/screenshot-2021-02-11-at-12.22.37.pngScreenshot 2021-02-11 at 12.22.37https://layerfmri.com/wp-content/uploads/2018/01/screenshot-2019-11-21-at-13.58.17.pngScreenshot 2019-11-21 at 13.58.17https://layerfmri.com/wp-content/uploads/2018/01/screen-shot-2018-01-04-at-16-01-14.pngScreen Shot 2018-01-04 at 16.01.14Most papers are still focusing on methodologoyhttps://layerfmri.com/wp-content/uploads/2018/01/screen-shot-2018-01-04-at-16-01-09.pngScreen Shot 2018-01-04 at 16.01.097T is the most popular field strengthhttps://layerfmri.com/wp-content/uploads/2018/01/screen-shot-2018-01-04-at-16-01-02.pngScreen Shot 2018-01-04 at 16.01.02The Netherlands are most active in layer fMRIhttps://layerfmri.com/wp-content/uploads/2018/01/screen-shot-2018-01-04-at-16-00-47.pngScreen Shot 2018-01-04 at 16.00.47Papers published per year2025-05-07T12:58:01+00:00monthlyhttps://layerfmri.com/2018/07/25/3d-printing-nii-data/https://layerfmri.com/wp-content/uploads/2018/07/20180727_105359-01.jpeg20180727_105359-01https://layerfmri.com/wp-content/uploads/2018/07/screenshot-2018-07-25-13-52-52.pngScreenshot 2018-07-25 13.52.52Input to IsoSurface: a binarized brain (FreeSurfers ASEG)https://layerfmri.com/wp-content/uploads/2018/07/screenshot-2018-07-25-13-51-45.pngScreenshot 2018-07-25 13.51.45Output of IsoSurface: a surface STL file. Is not necessarily a 2D-surface and looks transparent at some locations.https://layerfmri.com/wp-content/uploads/2018/07/screenshot-2018-07-25-13-43-56.pngScreenshot 2018-07-25 13.43.56After corrections in Meshlabhttps://layerfmri.com/wp-content/uploads/2018/07/screenshot-2018-07-25-13-43-04.pngScreenshot 2018-07-25 13.43.04FreeSurfer output without corrections in Meshlabhttps://layerfmri.com/wp-content/uploads/2018/07/20180725_123228-01.jpeg20180725_123228-01https://layerfmri.com/wp-content/uploads/2018/07/20180723_153853-01.jpeg20180723_153853-012025-05-06T15:12:21+00:00monthlyhttps://layerfmri.com/2017/11/27/how-to-deal-with-ghosts-in-high-res-epi/https://layerfmri.com/wp-content/uploads/2017/11/fig1.gifFig1https://layerfmri.com/wp-content/uploads/2017/11/combined.gifcombinedhttps://layerfmri.com/wp-content/uploads/2017/11/grappa_reference_tlines.gifGRAPPA_reference_tlinestSNR maps for various ACS schemes: FLASH is better than FLEET. FLEET is often better than single shot. And "segmented" is usually the worst. https://layerfmri.com/wp-content/uploads/2017/11/screenshot-2017-11-27-17-45-26.pngScreenshot 2017-11-27 17.45.26https://layerfmri.com/wp-content/uploads/2017/11/image22.pngimage22https://layerfmri.com/wp-content/uploads/2017/11/flash_grappa_bandwidth.gifFLASH_GRAPPA_BANDWIDTHhttps://layerfmri.com/wp-content/uploads/2017/11/image166.gifimage166https://layerfmri.com/wp-content/uploads/2017/11/siemens_epi-01.pngSIEMENS_EPI-01https://layerfmri.com/wp-content/uploads/2017/11/screenshot-2017-11-26-17-30-54.pngScreenshot 2017-11-26 17.30.54https://layerfmri.com/wp-content/uploads/2017/11/flash_grappa_small.gifFLASH_GRAPPA_small2025-02-14T17:12:04+00:00monthlyhttps://layerfmri.com/2024/04/18/layerification/2024-11-07T12:35:50+00:00monthlyhttps://layerfmri.com/2024/06/27/7thdinner/https://layerfmri.com/wp-content/uploads/2024/06/image-3.pngimagehttps://layerfmri.com/wp-content/uploads/2024/06/image-2.pngimagehttps://layerfmri.com/wp-content/uploads/2024/06/image-1.pngimage2024-08-22T16:52:17+00:00monthlyhttps://layerfmri.com/dinners/https://layerfmri.com/wp-content/uploads/2024/04/image-1.pngimage-1https://layerfmri.com/wp-content/uploads/2024/04/image.pngimage2024-06-27T14:33:05+00:00weekly0.6https://layerfmri.com/2024/06/11/2024brainhack/https://layerfmri.com/wp-content/uploads/2024/06/screen-shot-2024-06-21-at-22.25.55.pngScreen Shot 2024-06-21 at 22.25.55https://layerfmri.com/wp-content/uploads/2024/06/screen-shot-2024-06-21-at-22.25.46.pngScreen Shot 2024-06-21 at 22.25.46https://layerfmri.com/wp-content/uploads/2024/06/screen-shot-2024-06-21-at-22.25.37.pngScreen Shot 2024-06-21 at 22.25.37https://layerfmri.com/wp-content/uploads/2024/06/screen-shot-2024-06-21-at-22.25.31.pngScreen Shot 2024-06-21 at 22.25.31https://layerfmri.com/wp-content/uploads/2024/06/screen-shot-2024-06-21-at-22.25.23.pngScreen Shot 2024-06-21 at 22.25.23https://layerfmri.com/wp-content/uploads/2024/06/screen-shot-2024-06-21-at-22.25.11.pngScreen Shot 2024-06-21 at 22.25.11https://layerfmri.com/wp-content/uploads/2024/06/screen-shot-2024-06-21-at-22.44.49.pngScreen Shot 2024-06-21 at 22.44.49https://layerfmri.com/wp-content/uploads/2024/06/screen-shot-2024-06-21-at-22.24.53.pngScreen Shot 2024-06-21 at 22.24.53https://layerfmri.com/wp-content/uploads/2024/06/screen-shot-2024-06-21-at-22.24.45.pngScreen Shot 2024-06-21 at 22.24.45https://layerfmri.com/wp-content/uploads/2024/06/screen-shot-2024-06-21-at-22.24.28.pngScreen Shot 2024-06-21 at 22.24.282024-06-24T14:40:15+00:00monthlyhttps://layerfmri.com/2024/04/20/abstracts2024/2024-06-03T21:30:01+00:00monthlyhttps://layerfmri.com/2018/08/02/applications/https://layerfmri.com/wp-content/uploads/2018/08/correlation_matrix-013.pngCorrelation_matrix-01https://layerfmri.com/wp-content/uploads/2018/08/correlation_matrix-012.pngCorrelation_matrix-01https://layerfmri.com/wp-content/uploads/2018/08/correlation_matrix-011.pngCorrelation_matrix-01https://layerfmri.com/wp-content/uploads/2018/08/fig4-01.pngFig4-01https://layerfmri.com/wp-content/uploads/2018/08/12-cigar-illusion-w710-h473-2x-jpg-01.png12-cigar-illusion.w710.h473.2x.jpg-01https://layerfmri.com/wp-content/uploads/2018/08/fig_1-011.pngFig_1-01https://layerfmri.com/wp-content/uploads/2018/08/layer_atlas-011.pngLayer_atlas-01https://layerfmri.com/wp-content/uploads/2018/08/layer_atlas-01.pngLayer_atlas-01https://layerfmri.com/wp-content/uploads/2018/08/correlation_matrix-01.pngCorrelation_matrix-01https://layerfmri.com/wp-content/uploads/2018/08/feed_forward.giffeed_forward2024-02-13T16:10:01+00:00monthlyhttps://layerfmri.com/2017/11/26/getting-layers-in-epi-space/https://layerfmri.com/wp-content/uploads/2017/11/image61.pngimage6https://layerfmri.com/wp-content/uploads/2017/11/image7.pngimage7https://layerfmri.com/wp-content/uploads/2017/11/image6.pngimage6https://layerfmri.com/wp-content/uploads/2017/11/screenshot-2017-11-26-14-05-18.pngScreenshot 2017-11-26 14.05.18https://layerfmri.com/wp-content/uploads/2017/11/image4.pngimage4https://layerfmri.com/wp-content/uploads/2017/11/image3.pngimage3https://layerfmri.com/wp-content/uploads/2017/11/image2.pngimage2https://layerfmri.com/wp-content/uploads/2017/11/image1.pngimage12024-02-09T15:54:02+00:00monthlyhttps://layerfmri.com/2023/11/22/6thdinner-2/2024-02-08T21:44:57+00:00monthlyhttps://layerfmri.com/2021/02/22/vaso_ve/https://layerfmri.com/wp-content/uploads/2023/04/screen-shot-2023-04-07-at-12.49.45.pngscreen-shot-2023-04-07-at-12.49.45https://layerfmri.com/wp-content/uploads/2023/03/screen-shot-2023-03-02-at-12.35.19.pngscreen-shot-2023-03-02-at-12.35.19https://layerfmri.com/wp-content/uploads/2022/06/screenshot-2022-06-09-at-10.53.24.pngscreenshot-2022-06-09-at-10.53.24https://layerfmri.com/wp-content/uploads/2022/05/screen-shot-2022-05-31-at-11.47.04.pngscreen-shot-2022-05-31-at-11.47.04https://layerfmri.com/wp-content/uploads/2022/05/gif.gifgifhttps://layerfmri.com/wp-content/uploads/2022/05/image.pngimagehttps://layerfmri.com/wp-content/uploads/2021/02/functional_sensitivity-01.pngfunctional_sensitivity-01https://layerfmri.com/wp-content/uploads/2021/02/trigger_boco-01-3.pngTrigger_BOCO-01https://layerfmri.com/wp-content/uploads/2021/02/ezgif-3-38d9cb554f03.gifezgif-3-38d9cb554f03https://layerfmri.com/wp-content/uploads/2021/02/screenshot-2021-02-25-at-11.55.37-2.pngScreenshot 2021-02-25 at 11.55.372024-01-16T17:41:28+00:00monthlyhttps://layerfmri.com/2018/08/07/pialvoxels/https://layerfmri.com/wp-content/uploads/2018/08/screen-shot-2023-03-17-at-08.06.12.pngScreen Shot 2023-03-17 at 08.06.12https://layerfmri.com/wp-content/uploads/2018/08/negative_voxels-1.gifnegative_voxelshttps://layerfmri.com/wp-content/uploads/2018/08/ventricelgif.gifVentricelgifhttps://layerfmri.com/wp-content/uploads/2018/08/screenshot-2018-09-06-10-09-43.pngScreenshot 2018-09-06 10.09.43https://layerfmri.com/wp-content/uploads/2018/08/combined_histo.gifcombined_histohttps://layerfmri.com/wp-content/uploads/2018/08/noise_distribution.gifnoise_distributionhttps://layerfmri.com/wp-content/uploads/2018/08/with_text.gifwith_texthttps://layerfmri.com/wp-content/uploads/2018/08/negative_voxels.gifnegative_voxelshttps://layerfmri.com/wp-content/uploads/2018/08/correlation-01.pngCorrelation-01https://layerfmri.com/wp-content/uploads/2018/08/ois-01.pngois-01Also with Optical imaging in rats, it can be seen that large veins can be constricted for some time intervals of long tasks.2023-11-08T18:57:08+00:00monthlyhttps://layerfmri.com/2023/10/12/cdr2-2/https://layerfmri.com/wp-content/uploads/2024/04/3468b-image16.pngimage16https://layerfmri.com/wp-content/uploads/2024/04/a22ce-image9.pngimage9https://layerfmri.com/wp-content/uploads/2024/04/6c9db-image13.pngimage13https://layerfmri.com/wp-content/uploads/2024/04/79717-image18.pngimage18https://layerfmri.com/wp-content/uploads/2024/04/4c161-image20.pngimage20https://layerfmri.com/wp-content/uploads/2024/04/8a928-image10.pngimage10https://layerfmri.com/wp-content/uploads/2024/04/d6972-ed66d26f-29b5-407a-980d-52eaaea319e0.jpged66d26f-29b5-407a-980d-52eaaea319e0https://layerfmri.com/wp-content/uploads/2024/04/4e439-5483e9cb-823f-4e1a-a29b-9fe577829752.jpg5483e9cb-823f-4e1a-a29b-9fe577829752https://layerfmri.com/wp-content/uploads/2024/04/7207b-2e9d7937-f4fe-4c48-b1f5-5b9c8707cde2.jpg2e9d7937-f4fe-4c48-b1f5-5b9c8707cde2https://layerfmri.com/wp-content/uploads/2024/04/784e5-95a87753-7b75-4125-a81c-8f54d6a1c0ad.jpg95a87753-7b75-4125-a81c-8f54d6a1c0ad2023-10-17T18:25:28+00:00monthlyhttps://layerfmri.com/2020/04/02/devein/https://layerfmri.com/wp-content/uploads/2020/04/physiological_assumption-01-7.pngphysiological_assumption-01https://layerfmri.com/wp-content/uploads/2020/04/deconv-01-2.pngdeconv-01https://layerfmri.com/wp-content/uploads/2020/04/lambda-1.giflambdahttps://layerfmri.com/wp-content/uploads/2020/04/lambda.giflambdahttps://layerfmri.com/wp-content/uploads/2020/04/cbvscaling-01-1.pngCBVscaling-01https://layerfmri.com/wp-content/uploads/2020/04/cbvscaling-01.pngCBVscaling-01https://layerfmri.com/wp-content/uploads/2020/04/linear-01-2.pnglinear-01https://layerfmri.com/wp-content/uploads/2020/04/linear-01-1.pnglinear-01https://layerfmri.com/wp-content/uploads/2020/04/linear-01.pnglinear-01https://layerfmri.com/wp-content/uploads/2020/04/physiological_assumption-01-3.pngphysiological_assumption-012023-09-06T19:29:04+00:00monthlyhttps://layerfmri.com/2023/05/27/abstracts2023/https://layerfmri.com/wp-content/uploads/2023/07/screen-shot-2023-07-18-at-12.16.24.pngscreen-shot-2023-07-18-at-12.16.24https://layerfmri.com/wp-content/uploads/2023/07/screen-shot-2023-07-18-at-10.56.09.pngscreen-shot-2023-07-18-at-10.56.09https://layerfmri.com/wp-content/uploads/2023/07/screen-shot-2023-07-18-at-12.15.09.pngscreen-shot-2023-07-18-at-12.15.092023-07-20T12:01:36+00:00monthlyhttps://layerfmri.com/2023/07/10/nordic/https://layerfmri.com/wp-content/uploads/2023/07/1.020.png1.020https://layerfmri.com/wp-content/uploads/2023/07/1.003.png1.003https://layerfmri.com/wp-content/uploads/2023/07/1.002.png1.002https://layerfmri.com/wp-content/uploads/2023/07/ezgif.com-crop.gifezgif.com-crophttps://layerfmri.com/wp-content/uploads/2023/07/2-2.png2-2https://layerfmri.com/wp-content/uploads/2023/07/2-1.png2-1https://layerfmri.com/wp-content/uploads/2023/07/2.png2https://layerfmri.com/wp-content/uploads/2023/07/4.003.jpeg4.003https://layerfmri.com/wp-content/uploads/2023/07/4.002.jpeg4.002https://layerfmri.com/wp-content/uploads/2023/07/3.020.jpeg3.0202026-01-04T10:22:02+00:00monthlyhttps://layerfmri.com/2020/01/02/vasoworldwide/https://layerfmri.com/wp-content/uploads/2020/01/s0009_vasoactivation_m1.pngS0009_VASOactivation_M1https://layerfmri.com/wp-content/uploads/2020/01/york-3012632499-e1669839021289.jpgYorkhttps://layerfmri.com/wp-content/uploads/2022/10/vasoauthorspie.pngvasoauthorspiehttps://layerfmri.com/wp-content/uploads/2020/01/screenshot-2021-12-02-at-14.33.49.pngScreenshot 2021-12-02 at 14.33.49https://layerfmri.com/wp-content/uploads/2020/01/screenshot-2021-11-22-at-11.10.10.pngScreenshot 2021-11-22 at 11.10.10https://layerfmri.com/wp-content/uploads/2020/01/screenshot-2021-11-22-at-10.59.33.pngScreenshot 2021-11-22 at 10.59.33https://layerfmri.com/wp-content/uploads/2020/01/screenshot-2021-11-22-at-11.02.08.pngScreenshot 2021-11-22 at 11.02.08https://layerfmri.com/wp-content/uploads/2020/01/screenshot-2021-07-20-at-14.29.31.pngScreenshot 2021-07-20 at 14.29.31https://layerfmri.com/wp-content/uploads/2020/01/screenshot-2021-07-20-at-14.27.52.pngScreenshot 2021-07-20 at 14.27.52https://layerfmri.com/wp-content/uploads/2020/01/screenshot-2021-07-20-at-14.25.13.pngScreenshot 2021-07-20 at 14.25.132023-07-02T12:17:23+00:00monthlyhttps://layerfmri.com/2019/03/22/analysispipeline/https://layerfmri.com/wp-content/uploads/2019/03/coverage_3d_layers.pngcoverage_3D_layers2023-04-06T19:04:08+00:00monthlyhttps://layerfmri.com/2023/01/25/metaphors2/https://layerfmri.com/wp-content/uploads/2023/01/wrestling.pngwrestlinghttps://layerfmri.com/wp-content/uploads/2023/01/traffigjam-01-2.pngtraffigjam-01-2https://layerfmri.com/wp-content/uploads/2023/01/philosopher-01-3.pngphilosopher-01-3https://layerfmri.com/wp-content/uploads/2023/01/philosopher-01-2.pngphilosopher-01-2https://layerfmri.com/wp-content/uploads/2023/01/philosopher-01-1.pngphilosopher-01-1https://layerfmri.com/wp-content/uploads/2023/01/philosopher-01.pngphilosopher-01https://layerfmri.com/wp-content/uploads/2023/01/scalpel-01-2.pngscalpel-01-2https://layerfmri.com/wp-content/uploads/2023/01/cheap_kings-01-2.pngcheap_kings-01-2https://layerfmri.com/wp-content/uploads/2023/01/children-01-2.pngchildren-01-2https://layerfmri.com/wp-content/uploads/2023/01/fishingexpedition-01-2.pngfishingexpedition-01-22023-01-31T16:48:29+00:00monthlyhttps://layerfmri.com/2019/06/22/mp2rage/https://layerfmri.com/wp-content/uploads/2019/06/ezgif-3-c25d481d6d.gifezgif-3-c25d481d6dhttps://layerfmri.com/wp-content/uploads/2019/06/explanation-01-1.pngExplanation-01https://layerfmri.com/wp-content/uploads/2019/06/screenshot-2019-06-22-at-16.46.20-e1561215010462.pngScreenshot 2019-06-22 at 16.46.20https://layerfmri.com/wp-content/uploads/2019/06/gif_x_s.gifgif_x_Shttps://layerfmri.com/wp-content/uploads/2019/06/gif_y_s.gifgif_y_Shttps://layerfmri.com/wp-content/uploads/2019/06/gif_y.gifgif_yhttps://layerfmri.com/wp-content/uploads/2019/06/gif_x.gifgif_xhttps://layerfmri.com/wp-content/uploads/2019/06/partial_fouerir-01-1.pngPartial_fouerir-01https://layerfmri.com/wp-content/uploads/2019/06/partial_fouerir-01-e1561124692569.pngPartial_fouerir-01https://layerfmri.com/wp-content/uploads/2019/06/screenshot-2019-06-21-at-14.33.52.pngScreenshot 2019-06-21 at 14.33.522024-02-27T18:13:12+00:00monthlyhttps://layerfmri.com/2018/04/12/ss-si-vaso-pitfalls-in-visual-cortex/https://layerfmri.com/wp-content/uploads/2018/04/fig-inflow2.pngfig-inflow2https://layerfmri.com/wp-content/uploads/2018/04/fig-inflow.pngfig-inflowhttps://layerfmri.com/wp-content/uploads/2018/04/image119.gifimage119https://layerfmri.com/wp-content/uploads/2018/04/screenshot-2019-05-28-at-14.30.07.pngScreenshot 2019-05-28 at 14.30.07https://layerfmri.com/wp-content/uploads/2018/04/image127.pngimage127https://layerfmri.com/wp-content/uploads/2018/04/vaso_v1.gifVASO_V1https://layerfmri.com/wp-content/uploads/2018/04/screenshot-2018-09-04-17-46-46.pngScreenshot 2018-09-04 17.46.46https://layerfmri.com/wp-content/uploads/2018/04/image16.gifimage16https://layerfmri.com/wp-content/uploads/2018/04/screenshot-2018-08-31-11-05-25.pngScreenshot 2018-08-31 11.05.25https://layerfmri.com/wp-content/uploads/2018/04/ezgif-1-e294492c2c1.gifezgif-1-e294492c2c2022-12-09T18:29:39+00:00monthlyhttps://layerfmri.com/2022/12/05/fifth-layer-fmri-dinner/2022-12-07T19:44:46+00:00monthlyhttps://layerfmri.com/2022/03/16/abstracts2022/2022-09-27T09:35:46+00:00monthlyhttps://layerfmri.com/2021/02/21/brainqr/https://layerfmri.com/wp-content/uploads/2021/02/screenshot-2021-06-15-at-15.00.24.pngScreenshot 2021-06-15 at 15.00.242022-06-22T06:32:54+00:00monthlyhttps://layerfmri.com/2022/05/27/hackathon22/https://layerfmri.com/wp-content/uploads/2022/06/image7-1.pngimage7-1https://layerfmri.com/wp-content/uploads/2022/06/image7.pngimage7https://layerfmri.com/wp-content/uploads/2022/06/image6.pngimage6https://layerfmri.com/wp-content/uploads/2022/06/image5.pngimage5https://layerfmri.com/wp-content/uploads/2022/06/screenshot-2022-06-17-at-14.43.50-1.pngscreenshot-2022-06-17-at-14.43.50-1https://layerfmri.com/wp-content/uploads/2022/06/screenshot-2022-06-18-at-12.38.23.pngscreenshot-2022-06-18-at-12.38.23https://layerfmri.com/wp-content/uploads/2022/06/screenshot-2022-06-17-at-14.43.50.pngscreenshot-2022-06-17-at-14.43.50https://layerfmri.com/wp-content/uploads/2022/05/screen-shot-2022-05-27-at-14.50.29.pngscreen-shot-2022-05-27-at-14.50.29https://layerfmri.com/wp-content/uploads/2022/05/image-01.pngimage-012022-06-18T10:59:41+00:00monthlyhttps://layerfmri.com/2020/05/29/laynii-setup/https://layerfmri.com/wp-content/uploads/2020/05/screenshot-2020-05-29-at-12.02.25.pngScreenshot 2020-05-29 at 12.02.25https://layerfmri.com/wp-content/uploads/2020/05/4a.png4ahttps://layerfmri.com/wp-content/uploads/2020/05/8.png8https://layerfmri.com/wp-content/uploads/2020/05/7.png7https://layerfmri.com/wp-content/uploads/2020/05/5.png5https://layerfmri.com/wp-content/uploads/2020/05/screenshot-2020-05-29-at-12.11.32-1.pngScreenshot 2020-05-29 at 12.11.32https://layerfmri.com/wp-content/uploads/2020/05/screenshot-2020-05-29-at-12.25.28.pngScreenshot 2020-05-29 at 12.25.28https://layerfmri.com/wp-content/uploads/2020/05/screenshot-2020-05-29-at-12.19.23.pngScreenshot 2020-05-29 at 12.19.23https://layerfmri.com/wp-content/uploads/2020/05/screenshot-2020-05-29-at-12.13.57.pngScreenshot 2020-05-29 at 12.13.57https://layerfmri.com/wp-content/uploads/2020/05/screenshot-2020-05-29-at-12.03.24.pngScreenshot 2020-05-29 at 12.03.242022-03-10T13:19:37+00:00monthlyhttps://layerfmri.com/2020/10/07/cbvbaseline/2025-02-09T18:56:21+00:00monthlyhttps://layerfmri.com/2019/08/12/baddi/2022-01-26T09:47:02+00:00monthlyhttps://layerfmri.com/2021/05/04/abstracts2021/2021-10-18T08:43:48+00:00monthlyhttps://layerfmri.com/2021/08/13/4thdinner/https://layerfmri.com/wp-content/uploads/2024/04/d19ec-screenshot-2021-09-16-at-15.32.34.pngScreenshot 2021-09-16 at 15.32.342021-10-07T10:52:42+00:00monthlyhttps://layerfmri.com/2015/10/23/2015meeting/2021-09-27T09:48:44+00:00monthlyhttps://layerfmri.com/2021/08/13/2nddinner/2021-09-16T11:33:35+00:00monthlyhttps://layerfmri.com/2021/08/13/3rddinner/2021-09-16T11:31:29+00:00monthlyhttps://layerfmri.com/2018/01/04/high-field-mri-scanners/https://layerfmri.com/wp-content/uploads/2018/01/7t_world.png7T_worldhttps://layerfmri.com/wp-content/uploads/2018/01/screen-shot-2018-01-04-at-15-53-24.pngScreen Shot 2018-01-04 at 15.53.24https://layerfmri.com/wp-content/uploads/2018/01/screen-shot-2018-01-04-at-15-54-09.pngScreen Shot 2018-01-04 at 15.54.092021-09-10T07:28:37+00:00monthlyhttps://layerfmri.com/2021/08/13/2019-minnesota-workshop-on-cortical-depth-resolved-fmri-methods/2021-09-07T15:38:46+00:00monthlyhttps://layerfmri.com/2021/08/13/1stdinner/2021-09-07T15:30:24+00:00monthlyhttps://layerfmri.com/2018/06/21/2018-layer-fmri-meeting-as-part-of-the-ismrm-study-group-current-issues-in-brain-function/2021-08-13T14:28:24+00:00monthlyhttps://layerfmri.com/2018/11/29/installing-isisconv/https://layerfmri.com/wp-content/uploads/2018/11/screenshot-2018-11-29-08-00-54.pngScreenshot 2018-11-29 08.00.54https://layerfmri.com/wp-content/uploads/2018/11/screenshot-2018-11-29-08-00-44.pngScreenshot 2018-11-29 08.00.442021-08-12T10:40:32+00:00monthlyhttps://layerfmri.com/2018/05/14/installing-an-idea-virtual-box-for-ve11/https://layerfmri.com/wp-content/uploads/2018/05/screenshot-2019-04-02-at-12.03.35.pngScreenshot 2019-04-02 at 12.03.35https://layerfmri.com/wp-content/uploads/2018/05/screenshot-2018-05-14-16-18-06.pngScreenshot 2018-05-14 16.18.06https://layerfmri.com/wp-content/uploads/2018/05/screenshot-2018-05-14-14-25-26-e1526322518535.pngScreenshot 2018-05-14 14.25.26https://layerfmri.com/wp-content/uploads/2018/05/screenshot-2018-05-14-14-24-20.pngScreenshot 2018-05-14 14.24.20https://layerfmri.com/wp-content/uploads/2018/05/screenshot-2018-05-14-13-59-32.pngScreenshot 2018-05-14 13.59.32you can check, if Windows sees the mars, by opening a consolehttps://layerfmri.com/wp-content/uploads/2018/05/screenshot-2018-05-14-13-59-14.pngScreenshot 2018-05-14 13.59.14and pinking the IP address of mars.https://layerfmri.com/wp-content/uploads/2018/05/screenshot-2018-05-14-13-57-54.pngScreenshot 2018-05-14 13.57.54it should be automatically obtainedhttps://layerfmri.com/wp-content/uploads/2018/05/screenshot-2018-05-14-13-57-47.pngScreenshot 2018-05-14 13.57.47select IPv4 https://layerfmri.com/wp-content/uploads/2018/05/screenshot-2018-05-14-13-57-34.pngScreenshot 2018-05-14 13.57.34go to propertieshttps://layerfmri.com/wp-content/uploads/2018/05/screenshot-2018-05-14-13-57-23.pngScreenshot 2018-05-14 13.57.23selece the new connection2021-07-21T18:38:54+00:00monthlyhttps://layerfmri.com/2018/09/26/columns/https://layerfmri.com/wp-content/uploads/2018/09/edge_error.gifedge_errorhttps://layerfmri.com/wp-content/uploads/2018/09/scaled.pngscaledhttps://layerfmri.com/wp-content/uploads/2018/09/scaling.gifscalinghttps://layerfmri.com/wp-content/uploads/2018/09/with_rim.gifwith_rimhttps://layerfmri.com/wp-content/uploads/2018/09/pytagoras_correction.gifpytagoras_correctionhttps://layerfmri.com/wp-content/uploads/2018/09/extending_across_layers.gifextending_across_Layershttps://layerfmri.com/wp-content/uploads/2018/09/smoothing_path.gifsmoothing_pathhttps://layerfmri.com/wp-content/uploads/2018/09/growing.gifgrowinghttps://layerfmri.com/wp-content/uploads/2018/09/correspondence-011.pngcorrespondence-01https://layerfmri.com/wp-content/uploads/2018/09/correspondence-01.pngcorrespondence-012021-06-24T12:51:30+00:00monthlyhttps://layerfmri.com/2019/02/21/terminology/https://layerfmri.com/wp-content/uploads/2019/02/e3nxa5qxiaaezhu.jpegE3nxA5QXIAAezhuLayers of the oceanhttps://layerfmri.com/wp-content/uploads/2019/02/screenshot-2019-10-25-at-12.42.47.pngScreenshot 2019-10-25 at 12.42.47https://layerfmri.com/wp-content/uploads/2019/02/screenshot-2019-06-27-at-09.46.12-01.pngScreenshot 2019-06-27 at 09.46.12-01https://layerfmri.com/wp-content/uploads/2019/02/screenshot-2019-06-27-at-09.44.20.pngScreenshot 2019-06-27 at 09.44.20https://layerfmri.com/wp-content/uploads/2019/02/screenshot-2019-03-05-at-11.35.50.pngScreenshot 2019-03-05 at 11.35.50https://layerfmri.com/wp-content/uploads/2019/02/screenshot-2019-03-04-at-09.46.47.pngScreenshot 2019-03-04 at 09.46.47https://layerfmri.com/wp-content/uploads/2019/02/screenshot-2019-03-03-at-15.46.41.pngScreenshot 2019-03-03 at 15.46.41https://layerfmri.com/wp-content/uploads/2019/02/screenshot-2019-03-03-at-15.46.24.pngScreenshot 2019-03-03 at 15.46.24https://layerfmri.com/wp-content/uploads/2019/02/depthvslayers.pngdepthvslayershttps://layerfmri.com/wp-content/uploads/2019/02/screenshot-2019-03-03-at-09.18.31.pngScreenshot 2019-03-03 at 09.18.312021-06-14T07:30:28+00:00monthlyhttps://layerfmri.com/2021/03/11/virtualevent3/https://layerfmri.com/wp-content/uploads/2021/03/banner-01.pngBANNER-012025-01-05T20:46:28+00:00monthlyhttps://layerfmri.com/2020/09/14/virtualevent2/https://layerfmri.com/wp-content/uploads/2020/09/screenshot-2020-09-29-at-09.23.17-01.pngScreenshot 2020-09-29 at 09.23.17-012023-01-19T23:11:34+00:00monthlyhttps://layerfmri.com/2020/03/03/referral-to-description-of-layerification-algorithm-in-ln2_layers/https://layerfmri.com/wp-content/uploads/2020/05/screenshot-2020-05-11-at-12.26.27.pngFaruk's description of LN2_LAYERS2021-04-06T09:51:56+00:00monthlyhttps://layerfmri.com/2018/01/07/grappa-kernel-size/https://layerfmri.com/wp-content/uploads/2018/01/grappa_opti.gifGRAPPA_optihttps://layerfmri.com/wp-content/uploads/2018/01/kernel1.gifKERNELhttps://layerfmri.com/wp-content/uploads/2018/01/kernel.gifKERNELhttps://layerfmri.com/wp-content/uploads/2018/01/terminology-011.pngTerminology-01Terminology of GRAPPA Kernelhttps://layerfmri.com/wp-content/uploads/2018/01/terminology-01-e1520290573358.pngTerminology-01https://layerfmri.com/wp-content/uploads/2018/01/screenshot-2018-01-08-17-31-47.pngScreenshot 2018-01-08 17.31.47https://layerfmri.com/wp-content/uploads/2018/01/screenshot-2018-01-08-17-26-27.pngScreenshot 2018-01-08 17.26.27https://layerfmri.com/wp-content/uploads/2018/01/screenshot-2018-01-08-17-22-57.pngScreenshot 2018-01-08 17.22.57https://layerfmri.com/wp-content/uploads/2018/01/screenshot-2018-01-08-17-20-40.pngScreenshot 2018-01-08 17.20.40https://layerfmri.com/wp-content/uploads/2018/01/screenshot-2018-01-08-17-09-59.pngScreenshot 2018-01-08 17.09.592021-04-06T09:40:23+00:00monthlyhttps://layerfmri.com/2018/03/11/quick-layering/https://layerfmri.com/wp-content/uploads/2018/03/screenshot-2018-03-12-08-40-101.pnglayer profile examplehttps://layerfmri.com/wp-content/uploads/2018/03/screenshot-2018-03-12-08-40-10.pngScreenshot 2018-03-12 08.40.10https://layerfmri.com/wp-content/uploads/2018/03/screenshot-2018-03-12-08-40-47.pngexample of layer.datexample of layer.dathttps://layerfmri.com/wp-content/uploads/2018/03/screenshot-2018-03-12-08-40-32.pngScreenshot 2018-03-12 08.40.32https://layerfmri.com/wp-content/uploads/2018/03/profile-011.pngThis post deals with the most basic steps to get from high-res activity maps to layer-profileshttps://layerfmri.com/wp-content/uploads/2018/03/profile-01.pngprofile-01https://layerfmri.com/wp-content/uploads/2018/03/screenshot-2018-03-11-17-21-352-e1520803462207.pngLN_GROW_LAYERS outputExample of doing layer-analysis in EPI space.https://layerfmri.com/wp-content/uploads/2018/03/screenshot-2018-03-11-12-40-53.pngScreenshot 2018-03-11 12.40.535.) When you are happy with the ROI, you can save it as "rim.nii"https://layerfmri.com/wp-content/uploads/2018/03/screenshot-2018-03-11-12-28-11.pngScreenshot 2018-03-11 12.28.114.) In my convention, the CSF/GM border has value 1 and the GM/WM has the value 2. The open ends are closed with 3. With the bucket symbol you can fill the closed area with value 3.https://layerfmri.com/wp-content/uploads/2018/03/screenshot-2018-03-11-12-27-12.pngScreenshot 2018-03-11 12.27.123.) You can draw in the new file with the pen symbol. Selecting the other pen symbol allows you to change the drawing value.2021-04-06T09:40:03+00:00monthlyhttps://layerfmri.com/2018/03/15/smoothing-within-layers/https://layerfmri.com/wp-content/uploads/2018/03/screenshot-2018-03-15-14-12-16.pngScreenshot 2018-03-15 14.12.16https://layerfmri.com/wp-content/uploads/2018/03/image86_stil1.gifimage86_stilhttps://layerfmri.com/wp-content/uploads/2018/03/image86_stil.gifimage86_stilhttps://layerfmri.com/wp-content/uploads/2018/03/image73.pngimage73https://layerfmri.com/wp-content/uploads/2018/03/image77-e1521136990775.pngimage77https://layerfmri.com/wp-content/uploads/2018/03/image882.gifimage88https://layerfmri.com/wp-content/uploads/2018/03/image881.gifimage88https://layerfmri.com/wp-content/uploads/2018/03/image88.gifimage88https://layerfmri.com/wp-content/uploads/2018/03/image87.gifimage87BOLD smoothinghttps://layerfmri.com/wp-content/uploads/2018/03/image86.gifimage86VASO smoothing2021-04-06T09:39:39+00:00monthlyhttps://layerfmri.com/2018/07/19/2dlayers/https://layerfmri.com/wp-content/uploads/2018/07/screenshot-2018-07-19-14-48-14.pngScreenshot 2018-07-19 14.48.14https://layerfmri.com/wp-content/uploads/2018/07/screenshot-2018-07-19-14-34-06.pngScreenshot 2018-07-19 14.34.06The program LN_GROW_LAYERS then generates 21 layers from it.https://layerfmri.com/wp-content/uploads/2018/07/screenshot-2018-07-19-14-30-25.pngScreenshot 2018-07-19 14.30.25The first step it to draw the borderlines of GM and CSF and the borderline of GM and WM.https://layerfmri.com/wp-content/uploads/2018/07/screenshot-2018-07-19-14-15-20.pngScreenshot 2018-07-19 14.15.20https://layerfmri.com/wp-content/uploads/2018/07/screenshot-2018-07-19-14-08-47.pngScreenshot 2018-07-19 14.08.47when saving the file, make sure you select the "nii" prefix in the file name. E.g. gray.niihttps://layerfmri.com/wp-content/uploads/2018/07/screenshot-2018-07-19-14-08-17.pngScreenshot 2018-07-19 14.08.17open image with File -> Load image from diskhttps://layerfmri.com/wp-content/uploads/2018/07/screenshot-2018-07-19-14-00-12.pngScreenshot 2018-07-19 14.00.12https://layerfmri.com/wp-content/uploads/2018/07/screenshot.pngscreenshot2021-04-06T09:39:09+00:00monthlyhttps://layerfmri.com/2018/11/03/anatomically-informed-spatial-smoothing/https://layerfmri.com/wp-content/uploads/2018/11/ezgif-4-19790bf3bfad.gifezgif-4-19790bf3bfadhttps://layerfmri.com/wp-content/uploads/2018/11/screenshot-2019-02-11-at-14.45.20.pngScreenshot 2019-02-11 at 14.45.20https://layerfmri.com/wp-content/uploads/2018/11/with_leakage.gifwith_leakagehttps://layerfmri.com/wp-content/uploads/2018/11/no_smoothing-01.gifno_smoothing-01https://layerfmri.com/wp-content/uploads/2018/11/combined.gifcombinedhttps://layerfmri.com/wp-content/uploads/2018/11/leak.gifleakhttps://layerfmri.com/wp-content/uploads/2018/11/comparison-with-conventional.gifcomparison with conventionalhttps://layerfmri.com/wp-content/uploads/2018/11/smoothing_effect_21.gifsmoothing_effect_2https://layerfmri.com/wp-content/uploads/2018/11/seed1.gifseedhttps://layerfmri.com/wp-content/uploads/2018/11/smoothing_effect_2.gifsmoothing_effect_22021-04-06T09:38:32+00:00monthlyhttps://layerfmri.com/2019/02/05/intensity-projections-in-laynii/https://layerfmri.com/wp-content/uploads/2019/02/vinc_5_15-1.gifvinc_5_152021-04-06T09:38:04+00:00monthlyhttps://layerfmri.com/2019/02/22/how-many-layers-should-i-reconstruct/https://layerfmri.com/wp-content/uploads/2019/02/centroid-01-1.pngcentroid-01https://layerfmri.com/wp-content/uploads/2019/02/screenshot-2019-02-22-at-18.09.07.pngScreenshot 2019-02-22 at 18.09.07https://layerfmri.com/wp-content/uploads/2019/02/screenshot-2019-02-22-at-18.09.03.pngScreenshot 2019-02-22 at 18.09.03https://layerfmri.com/wp-content/uploads/2019/02/screenshot-2019-02-22-at-18.08.50.pngScreenshot 2019-02-22 at 18.08.50https://layerfmri.com/wp-content/uploads/2019/02/screenshot-2019-02-22-at-18.08.37.pngScreenshot 2019-02-22 at 18.08.37https://layerfmri.com/wp-content/uploads/2019/02/screenshot-2019-02-22-at-18.08.17.pngScreenshot 2019-02-22 at 18.08.17https://layerfmri.com/wp-content/uploads/2019/02/screenshot-2019-02-22-at-18.08.01.pngScreenshot 2019-02-22 at 18.08.01https://layerfmri.com/wp-content/uploads/2019/02/screenshot-2019-02-22-at-18.07.35.pngScreenshot 2019-02-22 at 18.07.35https://layerfmri.com/wp-content/uploads/2019/02/screenshot-2019-02-22-at-18.07.14.pngScreenshot 2019-02-22 at 18.07.14https://layerfmri.com/wp-content/uploads/2019/02/screenshot-2019-02-22-at-18.06.16.pngScreenshot 2019-02-22 at 18.06.162021-04-06T09:37:37+00:00monthlyhttps://layerfmri.com/2020/04/06/qa/https://layerfmri.com/wp-content/uploads/2020/04/all_measures_segmentation-01-8.pngall_measures_segmentation-01https://layerfmri.com/wp-content/uploads/2020/04/all_measures_vaso_bold-01-1.pngall_measures_VASO_BOLD-01https://layerfmri.com/wp-content/uploads/2020/04/noise_kernel-01-2.pngNoise_Kernel-01https://layerfmri.com/wp-content/uploads/2020/04/spetiotempral_map-01-2.pngspetiotempral_map-01https://layerfmri.com/wp-content/uploads/2020/04/gaus-01-5.pnggaus-01https://layerfmri.com/wp-content/uploads/2020/04/all_measures-01-2.pngall_measures-01https://layerfmri.com/wp-content/uploads/2020/04/all_measures-01-1.pngall_measures-01https://layerfmri.com/wp-content/uploads/2020/04/ica_sucks-01-4.pngICA_sucks-01https://layerfmri.com/wp-content/uploads/2020/04/all_measures_segmentation-01-7.pngall_measures_segmentation-01https://layerfmri.com/wp-content/uploads/2020/04/ica_sucks-01-3.pngICA_sucks-012021-04-06T09:35:38+00:00monthlyhttps://layerfmri.com/2020/04/24/equivol/https://layerfmri.com/wp-content/uploads/2020/04/v1_unfolding_v02.pngV1_unfolding_v02https://layerfmri.com/wp-content/uploads/2020/04/segmentation_noise_v02.pngsegmentation_noise_v02https://layerfmri.com/wp-content/uploads/2020/04/m1_unfolding_v02.pngM1_unfolding_v02https://layerfmri.com/wp-content/uploads/2020/04/it_doesn_t-matter_v02.pngit_doesn_t matter_v02https://layerfmri.com/wp-content/uploads/2020/04/geometry_v02.pnggeometry_v02https://layerfmri.com/wp-content/uploads/2020/04/ecentricity_v02.pngecentricity_v02https://layerfmri.com/wp-content/uploads/2020/04/curvature_noise_v02.pngcurvature_noise_v02https://layerfmri.com/wp-content/uploads/2020/04/bok-02_v02.pngBok-02_v02https://layerfmri.com/wp-content/uploads/2020/04/bok-01_v02.pngBok-01_v02https://layerfmri.com/wp-content/uploads/2020/04/digitization_noise-01-2.pngDigitization_noise-012021-04-06T09:33:41+00:00monthlyhttps://layerfmri.com/2018/03/13/finding-roi-of-the-double-layers-in-m1/https://layerfmri.com/wp-content/uploads/2018/03/screenshot-2019-07-16-at-10.43.30.pngScreenshot 2019-07-16 at 10.43.30https://layerfmri.com/wp-content/uploads/2018/03/correaltion_coeff.pngcorrealtion_coeffhttps://layerfmri.com/wp-content/uploads/2018/03/coils.pngcoilshttps://layerfmri.com/wp-content/uploads/2018/03/left_righht_assumetry.pngleft_righht_assumetryhttps://layerfmri.com/wp-content/uploads/2018/03/unknown.pngUnknownThe double layer structure can only be found at the lateral side of the hand knob (black arrow). The medial 'columns' are dominated from the upper layers only (red arrow). The depicted results refer to the average of 9 participants.https://layerfmri.com/wp-content/uploads/2018/03/screenshot-2018-03-20-09-56-01.pngScreenshot 2018-03-20 09.56.01finding double layer position within the hand knobhttps://layerfmri.com/wp-content/uploads/2018/03/screenshot-2018-03-20-09-54-49.pngScreenshot 2018-03-20 09.54.49finding double layer position within the hand knobhttps://layerfmri.com/wp-content/uploads/2018/03/screenshot-2018-03-20-09-54-08.pngScreenshot 2018-03-20 09.54.08finding double layer position within the hand knobhttps://layerfmri.com/wp-content/uploads/2018/03/m1_orientation-01.pngM1_orientation-01https://layerfmri.com/wp-content/uploads/2018/03/screenshot-2018-03-13-17-14-02.pngScreenshot 2018-03-13 17.14.02examples of finding the part of the motor cortex that has a double-layer feature during tapping tasks2021-03-22T10:33:03+00:00monthlyhttps://layerfmri.com/2018/11/29/tr-foci-pulse-optimisations/https://layerfmri.com/wp-content/uploads/2018/11/screenshot-2018-11-30-11-35-46.pngScreenshot 2018-11-30 11.35.46https://layerfmri.com/wp-content/uploads/2018/11/hight1.pnghight1https://layerfmri.com/wp-content/uploads/2018/11/allb1.pngallb1https://layerfmri.com/wp-content/uploads/2018/11/hypercap_partial.pnghypercap_partialhttps://layerfmri.com/wp-content/uploads/2018/11/hypercap_pi_pulse.pnghypercap_PI_pulsehttps://layerfmri.com/wp-content/uploads/2018/11/ezgif-4-f5b86ead0f51.gifezgif-4-f5b86ead0f51https://layerfmri.com/wp-content/uploads/2018/11/screenshot-2018-11-29-16-47-51.pngScreenshot 2018-11-29 16.47.512021-01-21T08:47:18+00:00monthlyhttps://layerfmri.com/2020/02/01/2020_summercourse/2020-08-14T11:30:12+00:00monthlyhttps://layerfmri.com/2018/01/04/layer-fmri-software-in-the-field/https://layerfmri.com/wp-content/uploads/2018/01/screenshot-2019-10-09-at-18.39.33.pngScreenshot 2019-10-09 at 18.39.33https://layerfmri.com/wp-content/uploads/2018/01/analysis_in_the_field-01-3.pngAnalysis_in_the_field-01https://layerfmri.com/wp-content/uploads/2018/01/curfature_smoothinf.gifcurfature_smoothinfhttps://layerfmri.com/wp-content/uploads/2018/01/equi_euclid_surfaces.pngequi_euclid_surfaceshttps://layerfmri.com/wp-content/uploads/2018/01/screenshot-2018-07-05-11-05-03.pngScreenshot 2018-07-05 11.05.03https://layerfmri.com/wp-content/uploads/2018/01/screenshot-2018-07-05-10-43-46.pngScreenshot 2018-07-05 10.43.46The name of the afni programs involvedhttps://layerfmri.com/wp-content/uploads/2018/01/screenshot-2018-07-05-10-19-56.pngScreenshot 2018-07-05 10.19.56example section of Daniel Glen's poster showing the depth estimates that could be used as layershttps://layerfmri.com/wp-content/uploads/2018/01/screenshot-2018-07-02-11-23-13.pngScreenshot 2018-07-02 11.23.13https://layerfmri.com/wp-content/uploads/2018/01/screenshot-2018-07-02-11-23-01.pngScreenshot 2018-07-02 11.23.01https://layerfmri.com/wp-content/uploads/2018/01/screenshot-2018-07-02-11-22-32.pngScreenshot 2018-07-02 11.22.322020-08-05T10:24:54+00:00monthlyhttps://layerfmri.com/2020/07/19/2020layerabstracts/2020-07-31T15:15:21+00:00monthlyhttps://layerfmri.com/2018/06/27/grappa-regularization/https://layerfmri.com/wp-content/uploads/2018/06/tsnr-3.giftSNRhttps://layerfmri.com/wp-content/uploads/2018/06/tsnr-2.giftSNRhttps://layerfmri.com/wp-content/uploads/2018/06/tsnr-1.giftSNRhttps://layerfmri.com/wp-content/uploads/2018/06/scanner_gif.gifscanner_gifhttps://layerfmri.com/wp-content/uploads/2018/06/ice_config_icepatiini.pngICE_Config_IcepatIinihttps://layerfmri.com/wp-content/uploads/2018/06/ice_config.pngICE_Confighttps://layerfmri.com/wp-content/uploads/2018/06/screenshot-2020-02-26-at-11.39.44.pngScreenshot 2020-02-26 at 11.39.44https://layerfmri.com/wp-content/uploads/2018/06/vaso_gif.gifVASO_gifVASO signal change, note the double tripe patternhttps://layerfmri.com/wp-content/uploads/2018/06/tsnr2.giftSNRVASO tSNR [0-30]https://layerfmri.com/wp-content/uploads/2018/06/t11.gifT1T1 contrast of functional data2020-07-31T14:42:06+00:00monthlyhttps://layerfmri.com/2020/05/08/virtualevent1/https://layerfmri.com/wp-content/uploads/2020/05/screenshot-2020-05-08-at-10.39.08.pngScreenshot 2020-05-08 at 10.39.082020-07-20T11:50:36+00:00monthlyhttps://layerfmri.com/2020/07/16/fens-webinar-on-layer-fmri/https://layerfmri.com/wp-content/uploads/2020/07/screenshot-2020-07-16-at-16.09.54.pngScreenshot 2020-07-16 at 16.09.542020-07-16T14:28:17+00:00monthlyhttps://layerfmri.com/2017/11/26/ss-si-vaso-sequence-manual/https://layerfmri.com/wp-content/uploads/2017/11/image20.gifimage20https://layerfmri.com/wp-content/uploads/2017/11/screenshot-2019-08-13-at-12.55.43.pngScreenshot 2019-08-13 at 12.55.43https://layerfmri.com/wp-content/uploads/2017/11/screenshot-2019-08-13-at-12.55.35.pngScreenshot 2019-08-13 at 12.55.35https://layerfmri.com/wp-content/uploads/2017/11/screenshot-2019-08-13-at-12.54.39.pngScreenshot 2019-08-13 at 12.54.39https://layerfmri.com/wp-content/uploads/2017/11/screenshot-2019-08-13-at-12.53.36.pngScreenshot 2019-08-13 at 12.53.36https://layerfmri.com/wp-content/uploads/2017/11/screenshot-2019-08-13-at-12.50.10.pngScreenshot 2019-08-13 at 12.50.10https://layerfmri.com/wp-content/uploads/2017/11/screenshot-2019-03-22-at-18.19.25-e1553531774751.pngScreenshot 2019-03-22 at 18.19.25https://layerfmri.com/wp-content/uploads/2017/11/image001.pngimage001https://layerfmri.com/wp-content/uploads/2017/11/screenshot-2018-10-11-16-16-40-e1539290866403.pngScreenshot 2018-10-11 16.16.40https://layerfmri.com/wp-content/uploads/2017/11/vaso_manual-011.pngVASO_Manual-012020-07-01T15:37:06+00:00monthlyhttps://layerfmri.com/2018/03/17/partial-fourier-imaging-at-high-resolutions/https://layerfmri.com/wp-content/uploads/2018/03/iterations8.pngiterations8Got to IPAC -> Application -> POCS -> Iteration. and change the number 2 to the number of 8.https://layerfmri.com/wp-content/uploads/2018/03/tsnr1.giftSNRhttps://layerfmri.com/wp-content/uploads/2018/03/t11.gifT1https://layerfmri.com/wp-content/uploads/2018/03/pfon_off_nochmal1-01_small.gifPFon_off_nochmal1-01_smallhttps://layerfmri.com/wp-content/uploads/2018/03/image141.gifimage14Effective signal blurring with strong T2*-decay for PF half k-space imaginghttps://layerfmri.com/wp-content/uploads/2018/03/image131.gifimage13Effective signal blurring with strong T2*-decay for full k-space imaginghttps://layerfmri.com/wp-content/uploads/2018/03/image121.gifimage12How the point sources are distributed across the finite voxels https://layerfmri.com/wp-content/uploads/2018/03/image111.gifimage11Point sources as different distances. The widths of the point sources is the same as the voxel width. These signals are used an an input in the following simulations.https://layerfmri.com/wp-content/uploads/2018/03/image101.gifimage10comparison of signal with and without PF. https://layerfmri.com/wp-content/uploads/2018/03/image14.gifimage142020-02-07T12:16:11+00:00monthlyhttps://layerfmri.com/2018/04/13/epi-phase-correction/https://layerfmri.com/wp-content/uploads/2018/04/nyquist_corr.pngNyquist_corrhttps://layerfmri.com/wp-content/uploads/2018/04/screenshot-2018-04-13-12-32-37.pngScreenshot 2018-04-13 12.32.37https://layerfmri.com/wp-content/uploads/2018/04/phase_correction.gifPhase_correctionhttps://layerfmri.com/wp-content/uploads/2018/04/screenshot-2018-04-13-12-19-19.pngScreenshot 2018-04-13 12.19.19https://layerfmri.com/wp-content/uploads/2018/04/screenshot-2018-04-13-12-13-11.pngScreenshot 2018-04-13 12.13.112020-02-06T12:08:16+00:00monthlyhttps://layerfmri.com/2019/11/22/cdrf2019/2019-11-23T12:20:33+00:00monthlyhttps://layerfmri.com/2019/10/18/abstracts/2019-11-21T13:12:42+00:00monthlyhttps://layerfmri.com/2019/02/11/high-quality-registration/https://layerfmri.com/wp-content/uploads/2019/02/screenshot3.gifscreenshot3https://layerfmri.com/wp-content/uploads/2019/02/lee_highres-2.gifLEE_highreshttps://layerfmri.com/wp-content/uploads/2019/02/andhighres.gifANDhighresANTS alignment with SyN. Note the location of the crosshair. Here the '-mask' option was used to optimize the registration quality of the area of interest, while sacrificing the registration quality of other brain areas.https://layerfmri.com/wp-content/uploads/2019/02/jil_highres-1.gifJIL_highresANTS alignment with SyN. Note the location of the crosshair. Here the '-mask' option was used to optimize the registration quality of the area of interest, while sacrificing the registration quality of other brain areas.https://layerfmri.com/wp-content/uploads/2019/02/jil.gifJilANTS alignment with SyN. Note the location of the crosshair. Here the '-mask' option was used to optimize the registration quality of the area of interest, while sacrificing the registration quality of other brain areas.https://layerfmri.com/wp-content/uploads/2019/02/lee2.gifLEE2ANTS alignment with SyN. Note the location of the crosshair. Here the '-mask' option was used to optimize the registration quality of the area of interest, while sacrificing the registration quality of other brain areas.https://layerfmri.com/wp-content/uploads/2019/02/chr.gifCHRANTS alignment with SyN. Note the location of the crosshair. Here the '-mask' option was used to optimize the registration quality of the area of interest, while sacrificing the registration quality of other brain areas.2021-11-10T08:25:58+00:00monthlyhttps://layerfmri.com/2019/10/20/tutorial-on-scanning-high-resolution-epi-on-siemens-scanners/2019-11-20T13:52:08+00:00monthlyhttps://layerfmri.com/tutorials/2019-11-20T13:44:34+00:00weekly0.6https://layerfmri.com/layer-fmri-jobs/2019-11-20T13:43:35+00:00weekly0.6https://layerfmri.com/layer-fmri-abstracts/2019-11-20T13:43:33+00:00weekly0.6https://layerfmri.com/layer-fmri-papers/2019-11-20T13:43:31+00:00weekly0.6https://layerfmri.com/2018/08/07/how-send-raw-k-space-data-within-to-any-given-server/https://layerfmri.com/wp-content/uploads/2018/08/screenshot-2018-08-16-11-59-03.pngScreenshot 2018-08-16 11.59.03https://layerfmri.com/wp-content/uploads/2018/08/twix_send_2.pngtwix_send_2https://layerfmri.com/wp-content/uploads/2018/08/twix_send.pngtwix_sendhttps://layerfmri.com/wp-content/uploads/2018/08/scanner_connection-01.pngScanner_connection-01https://layerfmri.com/wp-content/uploads/2018/08/twix.pngtwixhttps://layerfmri.com/wp-content/uploads/2018/08/original_ice_program1.pngoriginal_ice_programoriginal IceProgram in MriCustomer/seq/IceConfiguratorshttps://layerfmri.com/wp-content/uploads/2018/08/edited_ice_program.pngedited_ice_programfor the raw data send, the orange parts must be included. Note the IP address of the server where the data are supposed to be scanned tohttps://layerfmri.com/wp-content/uploads/2018/08/binfiles.pngbinfilesnecessary bin files need to be stored in MedCom/binhttps://layerfmri.com/wp-content/uploads/2018/08/lib.pnglibnecessary library files need to be stored in MedCom/MCIR/Med/lib2019-07-16T15:37:35+00:00monthlyhttps://layerfmri.com/2018/05/24/renzos-power-point-slide-repository/2019-05-09T15:42:22+00:00monthlyhttps://layerfmri.com/2018/01/29/multiple-digit-maps/2018-06-28T22:00:37+00:00monthlyhttps://layerfmri.com/2018/03/23/unwanted-spatial-blurring-during-resampling/https://layerfmri.com/wp-content/uploads/2018/03/valentin_gif.gifValentin_gifhttps://layerfmri.com/wp-content/uploads/2018/03/rev38_advances_helps-01.pngrev38_advances_helps-01https://layerfmri.com/wp-content/uploads/2018/03/nodding.pngnoddingResolution loss due to head motion is in the range of the voxel size.https://layerfmri.com/wp-content/uploads/2018/03/bo_.pngBO_Resolution loss due to distortion correction is in the range of the voxel size.https://layerfmri.com/wp-content/uploads/2018/03/211.png21https://layerfmri.com/wp-content/uploads/2018/03/linear.giflinearhttps://layerfmri.com/wp-content/uploads/2018/03/interpolation.gifinterpolationhttps://layerfmri.com/wp-content/uploads/2018/03/interpolation_spline5_nearest.gifinterpolation_spline5_Nearesthttps://layerfmri.com/wp-content/uploads/2018/03/interpolation_spline3_5.gifinterpolation_spline3_5https://layerfmri.com/wp-content/uploads/2018/03/interpolation_nearest.gifinterpolation_NEAREST2018-05-20T00:07:06+00:00monthlyhttps://layerfmri.com/2018/01/04/layer-fmri-researcher/2018-01-07T22:42:27+00:00monthlyhttps://layerfmri.com/2017/11/30/using-a-standalone-nii-i-o-in-c/2018-01-07T22:29:25+00:00monthlyhttps://layerfmri.com/2017/12/21/bias-field-correction/2024-11-20T13:32:06+00:00monthlyhttps://layerfmri.com/2017/11/25/motion-and-bold-correction/https://layerfmri.com/wp-content/uploads/2017/11/screenshot-2017-11-25-15-29-39.pngScreenshot 2017-11-25 15.29.39https://layerfmri.com/wp-content/uploads/2017/11/image10.pngimage10https://layerfmri.com/wp-content/uploads/2017/11/screenshot-2017-11-25-15-27-14.pngScreenshot 2017-11-25 15.27.14https://layerfmri.com/wp-content/uploads/2017/11/image5.pngimage5https://layerfmri.com/wp-content/uploads/2017/11/20171125_083115-01.jpeg20171125_083115-012018-01-05T22:37:37+00:00monthlyhttps://layerfmri.com/the-field/2018-01-04T20:43:50+00:00weekly0.6https://layerfmri.com/research-field/2018-01-04T20:43:47+00:00weekly0.6https://layerfmri.com/code/https://layerfmri.com/wp-content/uploads/2017/12/screenshot-2017-12-21-13-28-35.pngScreenshot 2017-12-21 13.28.35https://layerfmri.com/wp-content/uploads/2017/12/bias.gifbias2017-11-25T16:40:38+00:00weekly0.6https://layerfmri.com/brain-art/2017-11-25T16:40:36+00:00weekly0.6https://layerfmri.com/contact/2017-11-25T00:31:45+00:00weekly0.6https://layerfmri.comdaily1.02026-03-31T17:46:21+00:00