Overview

Big steps:

1. Manual aligment of MP2RAGE with EPI (optional when MP2RAGE is acquired in same session)
2. ANTS alignment of MP2RAGE and EPI. (part of anatomical_maser.sh, see github)
3. Running Freesurfer on MP2RAGE data in EPI space. (part of anatomical_maser.sh, see github)
4. Using SUMA to get fine samples tissue borders in EPI-voxel space (in oblique space) (part of anatomical_maser.sh, see github)
5. Manual correction of Freesurfer GM-ribbon
6. calculating layers from GM-ribbon in neuroDebian.

Continue reading “Getting layers in EPI space” →