Overview
Big steps:
- Manual aligment of MP2RAGE with EPI (optional when MP2RAGE is acquired in same session)
- ANTS alignment of MP2RAGE and EPI. (part of anatomical_maser.sh, see github)
- Running Freesurfer on MP2RAGE data in EPI space. (part of anatomical_maser.sh, see github)
- Using SUMA to get fine samples tissue borders in EPI-voxel space (in oblique space) (part of anatomical_maser.sh, see github)
- Manual correction of Freesurfer GM-ribbon
- calculating layers from GM-ribbon in neuroDebian.
