Anatomically informed spatial smoothing

In this blog post, I want to describe the application and working principle of a few spatial smoothing algorithms that are implemented in LAYNII.

  1. Confined smoothing along similar anatomical structures with LN_GRADSMOOTH
  2. Smoothing along the layers with LN_LAYERSMOOTH
  3. Smoothing within columns with LN_LAYERSMOOTH
  4. Smoothing across specific spatial dimensions only with LN_DIRECT_SMOOTH

Continue reading “Anatomically informed spatial smoothing”

How send raw k-space data to any given server with Twix or with a modified ICE-chain

In this blog-post I want to describe a setup, how you can include an additional ICE functor in your reconstruction pipeline that sends raw Twix files from the Reconstruction computer to any given custom server.  Continue reading “How send raw k-space data to any given server with Twix or with a modified ICE-chain”