layer-fMRI abstracts 2024

This post summarized the layer-fMRI abstracts form major relevant conferences 2024, including ISMRM, OHBM. This is following the posts of previous years 2023, 2022, 2021, 2020, 2019.

OHBM, Seoul, Korea June 23 – 27

Abstract search tool by OHBM is here.

VSS May 17th-22nd, St. Pete Beach, Florida

Talk: 7T CBV FMRI REVEALS CORTICAL MICROCIRCUITS OF BOTTOM-UP SALIENCY IN THE HUMAN BRAIN, Peng Zhang , Chinese Academy of Sciences

Poster: FEEDBACK TO V1 STRONGLY INFLUENCES BOLD SIGNAL DURING CONTEXTUAL MODULATION: EVIDENCE FROM LAMINAR FMRI
Joseph Emerson, CMRR, POSTER PDF

Human visual perception relies on contextual information to make inferences about spatially localized features in visual scenes. Similarly, neural representations of local features in primary visual cortex (V1) are shaped by broad spatial context through long-range lateral connections and feedback from higher-order visual areas. However, it is unclear exactly how and to what extent lateral and feedback connectivity individually contribute to contextual modulation of neural responses in V1. Ultra-high-field fMRI have enabled noninvasive imaging of cortical layers in humans, which can be exploited to examine the cortical origins of neural signals underlying blood oxygenation-level-dependent (BOLD) contrast. We analyzed data from five participants using 7T fMRI at 0.6 mm isotropic resolution to measure the influence of visual context on BOLD response profiles across cortical depth in V1. Participants viewed sine-wave grating disks embedded in large surround gratings with matched spatial frequency and contrast. Segmentation cues were provided by either an offset in relative orientation or an offset in relative phase between target and surround gratings for a total of three contextual conditions plus a surround-only condition to measure the effects of cortical feedback in the absence of feedforward input. Our analysis isolated the effects of orientation-tuned surround suppression (OTSS) from figure-ground modulation (FGM). Consistent with contextually-driven responses measured in mice and monkeys, we found significant modulation of BOLD signal in target-selective voxels in the absence of feedforward input. While we found strong signatures of FGM in superficial and deep layers, we did not find significant modulation of the BOLD signal due to OTSS. Our results suggest that the mechanisms responsible for OTSS have a weaker impact on the BOLD signal. We conclude that a large proportion of the BOLD signal measured in V1 depends on feedback from higher-order visual cortex, which is reflected in contextually-dependent changes in laminar profiles.

Poster, OPTIMIZED LAYER-SPECIFIC FMRI METHODS TO DISSOCIATE FEEDFORWARD AND FEEDBACK INFORMATION ACROSS LAYERS OF THE VENTRAL VISUAL STREAM
Taylor L. Li, NIMH

Layer-specific fMRI promises to dissociate feedforward and feedback information across cortical laminae from V1 to downstream categoryselective visual regions in ventral occipitotemporal cortex (VOTC). However, using a cutting-edge functional MRI method called vascular space occupancy (VASO) to measure fMRI signals at submillimeter resolution comes with major methodological challenges. Thus, we introduce two methodological advances that allow us to measure layer-specific fMRI signals in VOTC. The first is a forward model that can predict the optimal flip angle regime for the VASO sequence in the brain region to be studied. The second is an anatomical segmentation routine that cleanly segments the cortical ribbon from white matter and cerebral spinal fluid for precise definition of cortical layers. We used this optimized VASO fMRI routine in a study on perceving and imaging faces and places. Participants saw the names of famous faces and places followed by either a picture (perception), or a white frame (mental imagery) during separate task blocks. After independently localizing the fusiform face area and parahippocampal place area, we found preliminary evidence that mental imagery elicits the strongest responses in the superficial and deep layers of the corresponding category-selective region that receive feedback signals from higherorder brain regions but not in the middle layers that receive feedforward signals from early visual cortex. In contrast, viewing pictures of famous faces and places elicits the strongest responses in the middle (and superficial) layers. Thus, our methodological advances allow us to accurately dissociate feedforward and feedback information across layers of VOTC.

Poster CORTICAL DEPTH-DEPENDENT POPULATION RECEPTIVE FIELD SIZE VARIATION IN HUMAN V1, V2 AND V3, Maya Jastrzebowska, Freie Universität Berlin, POSTER PDF

The early visual cortex is organized in accordance with well established principles of retinotopy and cortical magnification. Receptive field (RF) size increases systematically with eccentricity from fovea to periphery and along the visual hierarchy. However, the organization of RFs across cortical depths is not yet well understood. While non-human primate neurophysiology shows RF size variation across cortical laminae, evidence in humans is lacking. Here, we used submillimeter fMRI to map RF properties in vivo at the scale of cortical laminae. We measured gradient-echo blood oxygenation level dependent (BOLD) responses to a drifting bar stimulus using 7 Tesla fMRI and population receptive field (pRF) mapping in four human participants. We projected the fMRI data to eight equivolumetric cortical surfaces based on white matter and pial surface reconstructions. Fitting a pRF model to the BOLD time series of each vertex of each surface, we estimated the location in visual space and pRF size that best explain visual field selectivity. We computed the pRF size at 2 degrees of eccentricity in three early visual regions of interest (ROIs) V1, V2 and V3. For each participant and ROI, we characterized the cortical depth profile of pRF size, as well as the profile of the surround suppression to center excitation ratio (suppression index). We replicate previous findings of a U-shaped relation between pRF size and cortical depth in V1. Moreover, we extend these findings by demonstrating depth-dependent patterns in V2 and V3. Similarly to V1, pRF sizes in V2 are largest in deep layers, followed by superficial and middle layers, with the reverse pattern in V3. The suppression index remains flat across depths, consistent with previous reports. Our findings demonstrate that pRF size variation across cortical depth is robustly quantifiable in humans in vivo, lending support to future examinations of feedforward and feedback mechanisms of spatial vision.

ISMRM May 4th-9th 2024, in Singapore

For the links below to work, you must be logged in at the ISMRM proceedings website: https://submissions.mirasmart.com/ISMRM2024/Itinerary/Login.aspx

Addition requests are welcome.

Sunday

9:45-11:45, Room 325-326, MIS Ultrahigh Spatial Resolution Imaging in the Presence of Motion, Room 325-326

10:33 – 10:57: High-Resolution Functional Imaging (in the Presence of Motion), Renzo Huber, NIH. 

Monday

Poster: Designing & Actually Using High-Field RF Coils, 8:15- 9:15

1446 Computer 44, Evaluating the Performance of a Visual Coil in Physiological and Thermal Noise Dominated Regimes at Ultra-High Magnetic Field, Atena Akbari, London Ontario. open teaser.

Poster: Neuro, 14:45 – 15:45

1919 Computer 51, Laminar fMRI-MRS Study: Exploring the Relationship Between Cortical Depth Dependent BOLD Signals and Neurometabolites Concentrations in PCC, Ravichandran Rajkumar, Aachen. open teaser.

Power Pitch  fMRI: Vessels, Networks & Analysis, Power Pitch Theatre 1, Monday, 16:00- 18:00

0319 Screen 3, Improving laminar fMRI specificity by reducing macrovascular bias caused by respiration effects, Yuhui Chai, UIUC, Urbana. open teaser.

0321 Screen 5, Exploring the cerebellar cortical stripes in humans with 7T, motion-corrected, RF-shimmed MRI, Nikos Priovoulos, Amsterdam. open teaser.

0323 Screen 7 A novel biophysical simulation framework for intravascular MRI signals using 3D Vascular Anatomical Networks applied to VASO-fMRI, Grant Hartung, MGH. open teaser.

0324 Screen 8 Understanding signal specificity in fMRI: bSSFP vs. GRE-EPI signal dependence on cortical orientation to B0 at 9.4 Tesla, Dana Ramadan, Tuebingen. open teaser.

Tuesday

Oral BOLD Characteristics: Of Mice & Men, Nicoll 3, Tuesday 13:30 – 15:30

0536 14:54 Investigating timing of BOLD fMRI responses in individual cortical vessels to short and long stimulus durations, Divya Varadarajan, MGH. open teaser.

Brain function study group meeting: 15:45-16:45, Room 303-304.

PostersMesoscale fMRI Exhibition Hall (Hall 403), Tuesday 16:45 – 17:45

3124 Computer 49, Layer ReHo: Tool for characterizing mesoscale functional structure across layers and columns, Burak Akin, NIH. open teaser.

3125, Computer 50 NORDIC denoising on VASO data, Lasse Knudsen, Aarhus. open teaser.

3126 Computer 51 Small voxel sizes reduce extravascular dephasing from large veins in gradient-echo BOLD fMRI at 7T: a simulation study, Avery Berman, Ottawa. open teaser.

3127, Computer 52, Functional quantitative susceptibility mapping for layer specific activation, Sina Straub,  Mayo Clinic. open teaser.

3128, Computer 53, Laminar fMRI of the human hippocampus: Accounting for physiological fluctuations and vasculature, Viktor Pfaffenrot, Duisburg-Essen. open teaser.

3129, Computer 54, Layer-fMRI in lower brain structures: why is it so hard and what can we do about it? Renzo Huber, NIH. open teaser.

3130, Computer 55, High resolution fMRI identifies distinct patterns in myogenic (breath hold) and neurogenic (visual) BOLD responses, Daniel Gomez, MGH. open teaser.

3137, Computer 62 Functional line-scanning of cortical layers at 3T and 7T, Guoxiang Liu, Osaka. open teaser.

3138, Computer 63, Acquisition and characterisation of sub-millimetre resolution GE-BOLD laminar fMRI data at 3T and 7 T, Sriranga Kashyap, BrainTO. open teaser.

3139, Computer 64, Human Layer-specific VASO fMRI at 5.0T Whole-body MRI Scanner: A Preliminary Study, Zhilin Zhang, Chinese Academy of Sciences. open teaser.

Wednesday

Poster fMRI Acquisition I Wednesday 8:15 – 9:15

3267, Computer 34, Quantitative and Qualitative Evaluation of Geometric Distortion Correction in Submillimetre fMRI for Accurate Functional Mapping at 7T, Seong Dae Yun, Juelich. open teaser.

3310, Computer 77, Gradient Echo Sampling of a Spin Echo (GESSE) linescans for human laminar fMRI at 7T: combining echoes to vary functional contrast and sensitivity, Mukund Balasubramanian, MGH. open teaser.

3311 Computer 78 Microvascular specificity of spin-echo BOLD fMRI at 7T: the impact of EPI echo train length, Jeroen Siero, Utrecht. open teaser.

Poster fMRI Acquisition II Wednesday 9:15 – 10:15

3409 Computer 18 Using saturation bands to null signal from inflowing blood in single-slice fMRI: Toward a rapidly sampled black-blood functional contrast, Sébastien Proulx, MGH. open teaser.

3410, Computer 19, T1-weighted fMRI in mouse visual cortex at 0.1 mm resolution using a UTE sequence after iron-oxide contrast injection, Naman Jain, Queensland. open teaser.

3412, Computer 21, Concurrent 1D line-scan fMRI at multiple cortical locations with a novel non-contiguous, non-coplanar multiline acquisition in humans at 7 Tesla, Sangcheon Choi, MGH. open teaser.

3419 Computer 28 Limitations of line-scan MRI for directly measuring neural activity, Joshua Wilson, Stanford. open teaser.

3421 Computer 30 Submillimeter Whole-Brain VASO fMRI using a View-Sharing with Temporal Random Walk at 7 Tesla, Suhyung Park, Gwangju. open teaser.

Power Pitch Advances in Data Acquisition, Theatre 1, Wednesday 13:30 – 15:30

0959 Screen 19, Multi-slab whole-brain in vivo 0.35 mm human brain at 7 T with low undersampling to validate future acceleration & denoising, Faruk Gulban, Maastricht. open teaser.

Oral Mesoscale fMRI: Wednesday 13:30 – 15:30, Nicoll 1

0884 Characterisation of cortical depth dependent hemodynamics in early human development using high-resolution BOLD fMRI at 7 Tesla. Jucha Willers Moore, Kings College London. open teaser.

0885 T1234: A distortion-matched structural scan solution to misregistration of high resolution fMRI data, Kenny Kan, NIH. open teaser.

0886 Characterizing spatial heterogeneity of BOLD fMRI cortical-depth profiles of activation: the average profile may not be typical, Anna Blazejewska, MGH. open teaser.

887, 300 µm multi-echo bSSFP fMRI at 7 Tesla revealed the IPS-V1 feedback circuit of spatial attention in the human brain, Yifei Wang, Chinese Academy of Sciences. open teaser.

888 Enabling brain-wide mapping of directed functional connectivity at 3T via layer-dependent fMRI with draining-vein suppression, Wei-Tang Chang, UNC at Chapel Hill. open teaser.

0889 Human fMRI at 10.5T: new regimes of high resolutions, Luca Vizioli, CMRR. open teaser.

890, Laminar profile of hippocampal subregions during spatial navigation, Khazar Ahmadi, Bochum. open teaser.

0891 Laminar specific fMRI response is mainly regulated by first synaptic input-driven or more synchronous activity, Won Beom Jung, CNIR. open teaser.

0893 Distinct laminar neurovascular and metabolism responses across eccentricity revealed by multi-contrast visual fMRI at 7T, Xingfeng Shao, USC. open teaser.

Power Pitch  Clinical Connectivity, Theatre 3, Wednesday 15:45 – 17:45

1113 Screen 49, Altered dynamics of global cortical depth connectivity in depression, Patricia Pais-Roldán, Juelich. open teaser.

Power Pitch: Image Reconstruction, Theatre 1, Wednesday: 15:45 – 17:45

1070, Screen 6, Phase jolt: Second spatial derivative of phase images is a new contrast that offers many benefits for SWI type processing, Faruk Gulban, Maastricht. open teaser.

Thursday 

Poster Thursday, 09 May 2024 | 08:15

4263 Computer 97, 3D Dual-Polarity GRAPPA for Ghost Correction of Volumetric Echo-Planar Imaging Data, Scott Hoge, MGH. open teaser.

Oral Imaging Brain Anatomy & Physiology, Hall 606, Thursday 8:15 – 10:15

1129 9:15, Charting vascular network architecture in primate brain using ferumoxytol-weighted laminar MRI, Joonas Autio, RIKEN. open teaser.

1130 9:27 Imaging small intracortical blood vessels at 64 μm in-plane resolution in macaque monkey brain in vivo using a large-bore 7T MRI scanner, Jianbao Wang, Zhejiang. open teaser.

Oral Imaging Blood Vessels in the Brain Nicoll 2, Thursday 16:00 – 18:00

1382 17:36 Assessing Cerebral Microvascular Compliance with High-Resolution VASO MRI at 7T Fanhua Guo, USC. open teaser.

1383 17:48 In vivo mapping of the intra-cortical vasculature and layer-specific changes in Δχ and ΔR2* of human cerebral cortex using USPIO-MRI at 7T, Chenyang Li, New York. open teaser.

Oral Psychosis & Mood Disorders, Nicoll 1, Thursday 13:45 – 15:45

1239 13:57 Resting-state changes along the cortical depth detected during evolution of major depressive disorder, Patricia Pais-Roldán, Juelich. open teaser.

Power Pitch: Cutting-Edge Phantoms & Multimodal Imaging, Theatre 2, Thursday, 13:45 – 15:45

1327 Screen 31, Simultaneous EEG-fMRI at 7T with adapted EEG leads and reference sensors for high-quality, high-resolution imaging: human evaluation, Cristina Sainz Martinez, Bern. open teaser.

Oral Overcoming Imperfections & Artifacts, Nicoll 2, Thursday 13:45 – 15:45

1256 15:33 Field-Correcting GRAPPA (FCG) for improved mitigation of even-odd and field-related artifacts in EPI, Nan Wang, Stanford. open teaser.

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